Schedule for the EUROCarbDB annual meeting
Hinxton/Cambridge UK, April 25-27, 2006
Tuesday April 25
12:00 Lunch at EBI
13:00 –13:15 Martin Frank: General overview (Management)
13:15 –13:30 Willi von der Lieth : Report DS1
13:30 –13:45 Stephan Herget: Glycan Names and Sequencespace on the
basis of the existiong data collection (KEGG, CFG, BCSDB, Gycosciences.de.de)
13:45 –14:00 Tony Merry; structural diversity of carbohydrates
14:00 –14:15 Willi von der Lieth: Report DS2
14:15 –14:30 Matt Harrison : EUROcarbDB Data Model
14:30 –14:45 Hiren Joschi : EUROCarbDB network
Coffee break
15:15 –15:30 Stuart Haslam : Report DS3
15:30 –15:45 Kai Mass, René Ranzinger: MS Data model
15:45 –16:00 Matthew Campbell: HPLC data model
16:00 –16:15 Bas Leeflang : Report DS4
16:15 –16:30 Martin Frank : NMR Data Model
16:30 –16:45 Matthias Studer: XML exchange formats for NMR
Break out meetings for
EUROCarbDB data model, Structural Description
MS, HPLC
NMR
Dinner
Break out meetings (Continued)
EUROCarbDB data model, Structural Description
MS, HPLC
NMR
Meeting of the Steering Committee
Wednesday Aprlil 26
Views and activities at EBI
9:00 - 9:45 Claire O'Donovan, Sequence Database Group Coordinator "UniProt - Our data and services"
9:45-10:30 Chris Taylor, EBI Proteomics Services Team,
Progress in standards for reporting 'omics data
10:30-11:00 Coffee break
11:00-11:45 Kim Henrick , Macromolecular Structural Database Group
MSD: The European Bioinformatics Institute Macromolecular Structure Database and its application to Carbohydrate Ligands in the PDB
11:45-12:30 Dietrich Rebholz-Schuhmann,
Extraction of facts from scientific literature in molecular biology
(Title not confirmed)
12:30-14:00 Lunch
Other consortia:
14:00-14:45 Rasmus H. Fogh, Cambridge CCPN: A Collaborative Computing Project for the NMR Community (Title still open)
14:45-15:30 Sabine Flitch UK Glycochips Consortium, University of Manchester
(Title still open)
15:30-16:00 Coffee break
16:00-16:45 Stuart Haslam , ICL London
US consortium for functional glycomics
(Title still open)
16:45-17:30 David Goldberg ; Palo Alto Research Center
US consortium for functional glycomics: Cartoonist
(Title still open)
16:45:17:30 Jean-Emmanuel Faure European Commissions
Research Directorate General-Research Infrastructures
"Towards FP7 (2007-2013) and its support to Research Infrastructures"
Dinner
Break out meetings for
EUROCarbDB data model, Structural Description
MS, HPLC, NMR
Thursday April 27
9:00-10:00 Meeting of DS1 to DS4 to define the tasks for year two
10:00-10:30 Coffee break
10:30-12:00 Compilation of Tasks
12:00-12:30 Concluding discussions
12:30 Lunch
2nd Hands-on meeting, DKFZ Heidelberg, Germany, January 26-27, 2006
The
main purpose of this meeting is to make decisions on various
fundamental definitions, which will constitute as foundations for
future developments of the EUROCarbDB central database as well as the
network. The different topics have been intensively discussed in the
forum. There are areas, where more than one proposal exists. It is the
mission of the assigned coordinators to summarise and evaluate the
discussions and to provide a summary with a suggestion for adoption
which definitions / schemata shall be adopted for EUROCarbDB.
Ideally,
these proposals should be available before the meeting and made
available through the forum. To speed up the discussions, the
coordinators should provide drafts of tasks lists. The coordinators
will write minutes of the decisions made.
As a guest speaker, Phil
Toukach from the N.D. Zelinsky Institute Moscow, will give us an
overview of the current status of the Bacterial Carbohydrate Structure
Database he is managing.
Thursday 26th
10:00 – 10:30 Introduction, General remarks, Aims of this meeting
Willi von der Lieth (DKFZ)
10:30 – 12:00 EUROCarbDB data base model:
Coordinator: Matt Harrison (EBI)
12:00 – 13:00 Lunch
13:00 – 15:00 Structural Encoding of Monosaccharides and Glycan-Sequences
Coordinator: Willi von der Lieth (DKFZ)
15:00 – 15:30 Coffee Break
15:30 – 17:00 Data Model for MS and HPLC
Coordinator: Kai Mass (UGI), René Ranzinger (DKFZ),
Matthew Campbell (OGI)
17:00 – 17:30 Summary and decisions, Open questions,
Compilation of task lists
Chair: Willi von der Lieth (DKFZ)
17:30 – 18:00 Phil Toukach: Bacterial Carbohydrate Structure Database
Friday 27th
9:00 – 10:30 Data Model for NMR
Coordinator: Martin Frank (BCU), Roland Stenutz (SU),
Matthias Studer (UBA)
10:30 – 11:00 Coffee Break
11:00 – 12:00 EUROCarbDB network, object model, Implementation details
Coordinator: Hiren Joshi (DKFZ)
12:00 – 13:00 Lunch
13:00 – 15:00 Summary and decisions,
Compilation of tasks list with priorities for each DS
Chair: Martin Frank (BCU)
EuroCarbDB is a Research Infrastructure Design Study
Funded by the 6th Research Framework Program of the European Union
(Contract: RIDS Contract number 011952)
