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Announcements
CARBBANK entries converted to GlydeII
10000 CARBBANK entries converted to GlycoCT
New Tools
MS Tools: Glyco-Peakfinder, GlycoWorkbench
NMR-Tools: ProSpectND - a versatile NMR processing package (Linux, Windows & Mac-OSX)
User Feedback
Questionnaires: Evaluation of Quality Criteria in EUROCarbDB
Mass Spectra, HPLC Data
Publications
Herget, S.; Ranzinger, R.; Maass, K.; Lieth, C. W., GlycoCT-a unifying sequence format for carbohydrates. Carbohydr Res 2008.
Campbell, M. P.; Royle, L.; Radcliffe, C. M.; Dwek, R. A.; Rudd, P. M., GlycoBase and autoGU: tools for HPLC-based glycan analysis. Bioinformatics 2008, 24, (9), 1214-6.
Ceroni, A.; Maass, K.; Geyer, H.; Geyer, R.; Dell, A.; Haslam, S. M., GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans. J Proteome Res 2008, 7, (4), 1650-9.
Maass, K.; Ranzinger, R.; Geyer, H.; von der Lieth, C. W.; Geyer, R., "Glyco-peakfinder" - de novo composition analysis of glycoconjugates. Proteomics 2007, 7, (24), 4435-44.
Ceroni, A.; Dell, A.; Haslam, S. M., The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures. Source Code Biol Med 2007, 2, 3.
EUROCarbDB Newsletter is available.
Statement of the European Science Foundation concerning the importance of glycomics for biomedical research
EuroCarbDB is a Research Infrastructure Design Study Funded by the 6th Research Framework Program of the European Union
(Contract: RIDS Contract number 011952).
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The EUROCarbDB design study aims to create the foundations for databases and bioinformatics tools in the realm of glycobiology and glycomics, and will establish mainly the technical framework for bottom to top initiative where all interested research groups can feed in their primary data. The new infrastructure will constitute the nucleus for the creation of a depository for carbohydrate related data similar to the extensively used data collections in the area of genomics and proteomics.
The EUROCarbDB study concentrates on the evaluation and development of the basic requirements for the proposed infrastructure. It consists of four thematic tasks that include feasibility studies as well as essential preparatory steps for the establishment of EUROCarbDB.
Official Title: Design Studies Related to the Development of Distributed, Web-based European Carbohydrate Databases (EUROCarbDB).
Funded by the EU SIXTH FRAMEWORK PROGRAMME
Structuring the European Research Area Specific Programme
RESEARCH INFRASTRUCTURE ACTION
DESIGN STUDY Implemented as SPECIFIC SUPPORT ACTION
